PRIMO

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PRIMO (PRotein Interactive MOdeling)

PRIMO is an interactive homology modeling pipeline.


Required input
The key can be obtained from the Modeller website
Optional input



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Automatically identify templates
Manually specify which of the identified templates to use during modeling?
BLAST database up-to-date as of Tues February 14 15:18:56 SAST 2023
Specify templates
Upload own templates
Template file Chain


Manually edit generated alignment?

T-COFFEE
MAFFT
MUSCLE
CLUSTAL-O
BLAST (only available if templates were automatically identified)


The prefix to use when naming models

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Copyright © 2025 RUBi all rights reserved.
Rowan Hatherley, David Brown, Michael Glenister, and Özlem Tastan Bishop


Funders

  • National Institutes of Health Common Fund (grant number U41HG006941)
  • National Research Foundation (NRF), South Africa, (grant number 93690)
  • Rhodes University, Research Office, Postdoctoral Fellowship

Cite Us


  • Hatherley R, Brown DK, Glenister M, Tastan Bishop Ö. “PRIMO: An Interactive Homology Modeling Pipeline.”  PLoS One.  2016 Nov 17;11(11):e0166698. doi: 10.1371/journal.pone.0166698.




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HHSuite database version: Sat Aug 28 15:48:47 SAST 2021 BLAST database up-to-date as of Tues February 14 15:18:56 SAST 2023

You may edit the future stages once templates are identified


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